conda fixes

cluster_setup/v2/dask-environment.yaml

@@ -293,9 +293,6 @@ Resources:
             - '30'
             - --nthreads
             - '2'
-            - --nprocs
-            - '1'
-            - --reconnect
           Cpu: !Ref DaskWorkerCPU
           Essential: true
           Image: !Ref DaskImage
@@ -511,20 +508,18 @@ Resources:
                 sleep 10
                 echo "\$(date) Creating daskpy3 conda environment"
                 echo "\$(date) Running in directory ${PWD}"
-                conda create --name daskpy3 python="3.7.10" -y
+                conda create --name daskpy3 -y
                 source activate daskpy3
-                conda install -c conda micromamba -y 
-                micromamba install -c conda basemap proj4 nodejs ipywidgets cartopy icclim -y 
-                pip install botocore aiobotocore zarr rechunker ipykernel boto3 dask distributed tornado cloudpickle msgpack blosc numpy pandas lz4 netcdf4 xarray bokeh s3fs fsspec h5netcdf h5py intake-esm intake
+                conda install -c conda micromamba -y
+                micromamba install -c conda pip -y
+		micromamba install -c conda netcdf4 msgpack hdf5 -y
+                pip install botocore==1.34.51 aiobotocore==2.12.2 boto3==1.34.51 rechunker==0.5.2 ipykernel==6.29.4 dask==2024.4.1 distributed==2024.4.1 tornado==6.4 cloudpickle==3.0.0 msgpack==1.0.7 blosc==1.10.2 numpy pandas lz4==4.3.3 netcdf4==1.6.5 xarray==2023.10.1 bokeh==3.4.0 s3fs==2024.3.1 fsspec==2024.3.1 h5netcdf==1.3.0 h5py==3.10.0 intake-esm==2024.2.6 intake==0.7.0 cartopy==0.22.0 icclim==6.5.0 nodejs ipywidgets==8.1.2 jupyterlab_widgets==3.0.10 zarr==2.17.2 geopandas==0.14.4 shapely==2.0.4
                 python -m ipykernel install --user --name daskpy3 --display-name "conda_daskpy3"
                 echo "\$(date) Updating Jupyter config options"
                 cp ~/.jupyter/jupyter_notebook_config.py ~/.jupyter/jupyter_notebook_config.py.bak
                 sed -i 's/^#c.NotebookApp.iopub_data_rate_limit.*$/c.NotebookApp.iopub_data_rate_limit = 1.0e10/' ~/.jupyter/jupyter_notebook_config.py
                 sed -i 's/^#c.NotebookApp.iopub_msg_rate_limit.*$/c.NotebookApp.iopub_msg_rate_limit = 1.0e10/' ~/.jupyter/jupyter_notebook_config.py
                 source /home/ec2-user/anaconda3/bin/deactivate
-                source activate JupyterSystemEnv
-                jupyter labextension install @jupyter-widgets/jupyterlab-manager@1.1
-                source /home/ec2-user/anaconda3/bin/deactivate
                 echo "\$(date) Finished!"
                 EOF