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Commit 5d2afade authored by edris's avatar edris
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Update installation.R and add .gitignore

parent acdd8400
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.Rproj.user
.Rhistory
.RData
.Ruserdata
......@@ -2,7 +2,7 @@ package_list <- c(
"MBMethPred", "fst", "rvest","htmlTable","limma", "genefilter","Rhtslib" ,"Rsamtools","ComplexHeatmap", "fgsea", "biomaRt", "AnnotationDbi", "gprofiler2",
"SummarizedExperiment", "shiny", "shinydashboard", "shinyWidgets", "htmlwidgets", "shinyjs",
"DT","dlookr", "doParallel", "foreach","RColorBrewer", "ggrepel", "umap", "tune", "ggpubr", "magic", "msigdbr",
"tibble", "ggfun", "missForest", "STRINGdb", "survival", "survminer", "data.table", "org.Hs.eg.db", "pathview", "gage", "gageData"
"tibble", "ggfun", "missForest", "STRINGdb", "survival", "survminer", "data.table", "org.Hs.eg.db", "pathview",
)
if (!requireNamespace("BiocManager", quietly = TRUE)) {
......@@ -13,7 +13,7 @@ if (!requireNamespace("BiocManager", quietly = TRUE)) {
install_if_missing <- function(package) {
if (!requireNamespace(package, quietly = TRUE)) {
if (package %in% c("limma","genefilter","Rhtslib" ,"Rsamtools", "ComplexHeatmap",
"fgsea", "biomaRt", "AnnotationDbi","org.Hs.eg.db", "pathview", "gage", "gageData",
"fgsea", "biomaRt", "AnnotationDbi","org.Hs.eg.db", "pathview",
"SummarizedExperiment", "STRINGdb")) {
BiocManager::install(package, dependencies = TRUE)
} else {
......
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